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Chirality in a quaternionic representation of the genetic code

A quaternionic representation of the genetic code, previously reported by the authors (BioSystems 141 (10–19), 2016), is updated in order to incorporate chirality of nucleotide bases and amino acids. The original representation associates with each …

Structure of force networks in tapped particulate systems of disks and pentagons. I. Clusters and loops

The force network of a granular assembly, defined by the contact network and the corresponding contact forces, carries valuable information about the state of the packing. Simple analysis of these networks based on the distribution of force strengths …

Structure of force networks in tapped particulate systems of disks and pentagons. II. Persistence analysis

In the companion paper [Pugnaloni et al., Phys. Rev. E 93, 062902 (2016)], we use classical measures based on force probability density functions (PDFs), as well as Betti numbers (quantifying the number of components, related to force chains, and …

Quaternionic representation of the genetic code

Abstract A heuristic diagram of the evolution of the standard genetic code is presented. It incorporates, in a way that resembles the energy levels of an atom, the physical notion of broken symmetry and it is consistent with original ideas by Crick …

Flow rate of polygonal grains through a bottleneck: Interplay between shape and size

We report two-dimensional simulations of circular and polygonal grains passing through an aperture at the bottom of a silo. The mass flow rate for regular polygons is lower than for diskse̊d, as observed by other authors. We show that both the exit …

Modeling of the dielectric properties of trabecular bone samples at microwave frequency

In this paper, the dielectric properties of human trabecular bone are evaluated under physiological condition in the microwave range. Assuming a two components medium, simulation and experimental data are presented and discussed. A special …

Exact predictions from the Edwards ensemble versus realistic simulations of tapped narrow two-dimensional granular columns

We simulate, via a discrete element method, the tapping of a narrow column of disks under gravity. For frictionless disks, this system has a simple analytical expression for the density of states in the Edwards volume ensemble. We compare the …

Is there any information on micro-structure in microwave tomography of bone tissue?

In this work, two-dimensional simulations of the microwave dielectric properties of models with ellipses and realistic models of trabecular bone tissue are performed. In these simulations, finite difference time domain methodology has been applied to …

Nonlinear dynamic analysis of an optimal particle damper

We study the dynamical behavior of a single degree of freedom mechanical system with a particle damper. The particle (granular) damping was optimized for the primary system operating condition by using an appropriate gap size for a prismatic …

Effect of particle shape and fragmentation on the response of particle dampers

A particle damper (PD) is a device that can attenuate mechanical vibrations thanks to the dissipative collisions between grains contained in a cavity attached to the vibrating structure. It has been recently suggested that, under working conditions …